If you want a game with a good story then you cant go wrong with the Broken Sword series or Beneath a Steel Sky
I'm surprised no one has mentioned the Monkey Island games. They all have this goofy, weird kind of humor.
Phoenix Wright is the best of all ! Other great story that I like : Puzzle Agent, Chateau of Dr Moreau, XIII Lost Identity, Broken Sword, Nick Chase, Gamebook Adventures
Thanks guys, I don't think a point and click is what I really want to play, So I got ASH, That's the style of game I am looking for, But the light version of chateau de Moreau was pretty fun. And is Chrino Trigger really bad on iPhone ?
Agreed on fantasy chronicle I'm lovin it right now...kemco does a great job as well as trying the best with translations..
Can't answer the other questions, but a few other games that have pretty good plotlines: Secret of Mana Mage Gauntlet Dungeon Hunter 1 + 2 all of the Final Fantasy games Pygmies Hoglet has a plot in kind of an off-color, silly way Wild Frontier is a KRPG with a better plot than most others.
It sucks cause I imported the 2nd DS game for much more than the 1200yen asking price on iOS just a few weeks ago. PW's story is quirky, emotional and well written though.